Loading...
 
Scientific Volume Imaging B.V.

Scientific Volume Imaging

Deconvolution - Visualization - Analysis



New features in Huygens Software

When not specified, changes apply to all Huygens Software products. Labels indicate particular products only: E = Huygens Essential, P = Huygens Professional, L = Huygens Localizer, C = Huygens Core. For older release information see: WhatsNewArchive.



No Tabs


What's new in Huygens 23.04

Huygens Professional, Essential, Localizer & Core


  • (All) Change in scripting with images/tables:
    • Creating images or tables returns a handle instead of their name.
      • Handles are to be used for Tcl and Python scripting.
      • Previously, the image name served this purpose and images could therefore not be renamed.
    • Rename images or tables without creating copies
      • Right-click the thumbnail and select "Rename Image/Table" or press F2 as a shortcut.
      • Use Tcl scripting with the rename command 'oldName rename newName'
  • (P/L) Python Scripting:
    • Updated Python from version 3.7.8 to version 3.11.1
    • Updated the Python image class to be compatible with image handles and image names.
  • (E/P) Deconvolution Express:
    • Improved automatic SNR and Acuity estimation. The suggested Acuity can no longer be out of the normal range.
  • (E/P/C) Deconvolution algorithms:
    • (CMLE/GMLE) Added a correction to the regularization for images with only one or two z slices.
    • (CMLE) Improved the correction to the regularization for under and oversampled images. This change is almost disabled when acuity is disabled, for better backwards compatibility.
    • Note: Deconvolution templates for shallow and/or very under or oversampled images might need adjustment.
  • (E/P) Workflow Processor:
    • Added an "Analyze Objects" task for doing object analysis in batch (see below).
    • Added "Automatic" deconvolution algorithm, which does deconvolution with automatically found settings like in the Decon Express.
    • Added the option to do Crosstalk Correction by using a Crosstalk Correction Template.
  • (E/P/C) Batch Object Analysis
    • It is now possible to do Object Analysis in batch by using a new task in the Workflow Processor.
    • (E/P) The Workflow Designer in the Object Analyzer has been improved and modified to support batch processing.
      • The "Time frame and detector" task has been reworked to a "Time series" task. It is now possible to apply parts of a workflow to each time frame in an image. This replaces some old task specific options like "Analyze time series". Support for analyzing raw array detector images has been deprecated.
      • The "Set visualization task" has been deprecated.
      • In the "Basic ROI operations" and "Set anchor" tasks it is now possible to set the segmentation group for some options.
      • The "Advanced ROI operations" task has been expanded with more options.
      • A new "ROI intensity removal" task has been added which can be used to remove intensity from an image by using the ROI.
  • (E/P/L) The Object Analyzer
    • Added a tutorial.
    • (E/P) Reported parameters:
      • It is now possible to save and load custom selections of parameters using templates.
    • Added the "HighContrast" parameters to the list of coloring parameters in the visualization tab. This parameter can be used to color objects in such a way nearby objects have contrasting colors.
    • Added mouse modes for drawing selections in regular shapes.
    • Analysis of 2D XY slices will no longer report parameters that are irrelevant or misleading for 2 dimensional images.
    • Added/improved GPU support for merging and removing objects, selecting objects with the lasso tool, and for various analysis operations.
    • Improve selection of objects. It is now possible to select multiple objects by using Ctrl + Left mouse button when in the analyze mouse mode. Selected objects will also be highlighted more clearly.
  • (E/P) Crosstalk Corrector:
    • Added support to crosstalk corrector for unprocessed Array Detector images
    • Added Crosstalk Correction Templates.
    • Updated the Mip preview.
  • (All) File readers:
    • HDF5 reader:
      • Read Luxendo metadata.
      • Added support for HDF5 images split over multiple files.
  • (C) Huygens command line interface (CLI):
    • Start Huygens Core from a command line with paths to a workflow template and an image to apply that workflow template to that image.
      • With this it becomes easy to integrate Huygens deconvolution and processing in your custom workflows.
      • This makes it easy to implement Huygens with a job scheduler (e.g. Slurm).

Minor Changes
  • (E/P) Improved raw Array Detector image support:
    • Added detector cropping option to the Cropper.
    • Gallery tool can visualize slices across the detector images.
  • (E/P) SFP renderer:
    • Use full resolution while rotating or zooming when this is fast enough.
  • (E/P/L) All renderers:
    • Customizable scale bar.
  • (E/P/L) Slicer/Twin Slicer/MIP renderers
    • Overlay hue bar that shows the look-up table of the image.
  • (E/P) PSF Distiller:
    • Made the STED Parameter estimation optional. You can now directly export your distilled STED PSF as is.
    • Lowered the allowed diameter for STED beads from a minimum of 25nm to 20nm to account for STED GATTA-Beads of 23nm.
    • Improved suggested SNR value and allowed different SNR values for different channels when distilling multiple channels from one image.
  • (All) File readers:
    • Abberior Msr/Obf:
      • Improved reading speed of chunked obf files containing large tile series and/or time series.
      • Fixed reading of the angle for rotated tile acquisitions in both Facility Line and STEDYCON files.
    • Tiff reader:
      • Added support for tiled tiffs with 8/16 bit (unsigned) integer and 32 bit (unsigned) integer/float datatypes.
      • Partial support added for 32 bit integer tiffs. These will be read in and converted to (32 bit) float images.
    • Ome-Tiff reader:
      • Improved reading in the data of a single file from a file series for special cases, for example files written by VisiView.
      • Improved attaching the channel meta data when loading a subset of the channels of the full image.
  • (All) File writers:
    • Ome-Tiff writer:
      • Save all Huygens Microscopic parameters not fitting in the OME schema to a custom SVI StructuredAnnotation.
      • All Huygens Microscopic parameters are now saved when using the OME-TIFF format, including STED, SPIM and Array Detector parameters and the parameter reliability states.
  • (E/P/L) Export of rendering:
    • Added the option to export to the Surface Renderer and Object Analyzer.
    • Added the option to export without border at original size in the Slicers.
  • (L) Cluster Analyzer:
    • Analysis of 2D tables will no longer report parameters that are irrelevant or misleading for 2 dimensional data and now contains relevant roundness measures for 2D data.
    • New coloring options: it is now possible to color the clusters based on some of their properties. For instance clusters with the same parent can be given the same color.
    • Add the "HighContrast" parameters to the list of coloring parameters in the visualization tab. This parameter can be used to color objects in such a way nearby clusters have contrasting colors.
  • (E/P/L) Preferences:
    • (P/L) Add setting for the prefered scripting shell (Python or Tcl).
  • (E/P/L) License Window:
    • Improve description when adding a license that does not work for the open product.

Bugfixes
  • (E/P) Deconvolution Express:
    • Fixed a bug when not supersampling all but at least one Array Detector channel.
  • (E/P/L) Workflow Processor:
    • Fixed small bugs that could happen when opening series files.
    • (E/P) Fixed a bug when not supersampling all but at least one Array Detector channel.
  • (E/P/L) Twin Slicer:
    • Fixed an issue where the right viewer of the Twin Slicer would not use the correct z-slice when the viewed images have different z-sampling.
  • (E/P/L) The Object Analyzer
    • Fixed a rare issue where the analysis would not continue correctly when pressing the stop button during analyze all.
    • Fixed an issue where parameters depending on the principal axes were not computed correctly for objects with negative principal components.
  • (E/P/L) The Object Tracker
    • Fixed an issue where the training could fail when two channels are very similar.
  • (All) File readers:
    • Olympus VSI: fixed crash when reading a file with a large number of acquisition markers.
  • (L) Cluster Analyzer:
    • Fixed an issue where parameters depending on the principal axes were not computed correctly for objects with negative principal components.


What's new in Huygens 22.10


Huygens Professional, Essential, Localizer & Core

  • (L) Cluster Analyzer: new tool in the Huygens Localizer for cluster analysis of localizations:
    • Cluster the localizations in 2D or 3D using the FOCAL or DBSCAN algorithms.
    • High quality iso-surface rendering of clusters using ray tracing.
    • Measurements for volume, localization density, width, length and more of the clusters.
    • MIP rendering to use a specific channel as a reference for determining the optimal cluster parameters.
    • In-tool tutorial to get started and familiarize yourself with the main features.
    • Direct link between the rendered scene and cluster statistics table: select clusters to highlight them in both.
    • Extensive filtering options and option to export the cluster statistics to spreadsheets (.txt or .csv) or Matlab (.m).
  • (All) File readers:
    • Olympus OIR reader:
      • Full support for reading Olympus OIR files on all platforms: Windows, Linux and Mac(x86)*.
  • (All) File writers:
    • OME-TIFF:
      • Added an OME-TIFF writer to Huygens.
      • Save 5D OME-TIFF files and support writing multi-detector images using file series.
  • (E/P/L) Object Analyzer:
    • Add reported parameter for measuring the average intensity of an object.
    • Expand the list of parameters that can be used for coloring.
    • (E/P) Add an "export segmentation" button.
    • Add rows to the table for each connected component of the ROI.
  • (E/P/L) Microscopic Parameters Window:
    • Improve clarity of the parameter status symbols:
      • Verified parameters are now marked with a green checkmark.
      • Parameters that are read from file are now marked with a green dot.
  • (All) Mac M1 installer:
    • Full support for the Huygens Software suite, optimized for ARM-based M1 chips.
  • (C/E/P) Deconvolution:
    • Specific deconvolution for SoRa systems, included in the Spinning Disk option.
    • Add new microscope type for VisiTech iSIM data.
  • (E/P) Array Detector Quality Control:
    • Add a new tool for analyzing individual detector intensities and shifts for array detector images.
  • (C/P/L) Python:
    • Add functions to export Huygens image data to Python lists and vice versa.
  • (E/P/L) Help:
    • Help functions that can be found in the Huygens Core manual is now automatically opened in a Huygens Core manual.
  • (E/P) Workflow Processor:
    • Added support for batch stitching based on XML files with offsets.
  • (E/P/L) MIP rendering:
    • Improve accuracy of the rendering, especially when zoomed in.

* With the exception of ARM M1-based Macs

Minor changes
  • (E/P) Workflow Processor
    • Add option to save z mip of the image.
  • (All) File readers:
    • Tiff reader:
      • Improve support for tiff files written by imageJ, especially for large files (BigTiff).
      • Add support for reading jpeg encoded tiff files on Windows.
      • Add support for reading deflate compressed tiff files on Windows.
    • OME-TIFF reader:
      • Improved reading of different OME-TIFF file configurations, including files written by Slidebook.
      • Improved reading of metadata.
    • Olympus VSI:
      • Improved reading of metadata.
    • Nikon ND2:
      • Improved feedback after failing to read a file.
      • Improved reading of metadata.
  • (All) File writers:
    • Tiff: Add support for writing multi-detector images.
  • (E/P/L) User interface:
    • Add sliders to make it easier to navigate through channels, time frames and detectors in the histogram tab in the main window.
    • Added image dimension in the sub-image selection window.
  • (E/P/L) Cropper:
    • Improve automatic cropping for array detector images.
  • (E/P/L) Chromatic Aberration Corrector:
    • Automatically choose the initial setting for the reference channel.

  • Huygens Nyquist Calculator (on svi.nl)
    • Added the new Sora and VT-iSIM microscope types.
    • Added Zeiss Airyscan 2 Sheppard Rings detector model for array detector microscopes.
    • Sanitize and warn for lens immersion refractive index and numerical aperature mismatches.
    • Warn for an invalid combination of wavelengths and excitation photon count.

Bugfixes
  • (E/P/L) Microscopic Parameters Window:
    • (Windows) Fix some options not being visible.
  • (All) Gpu processing:
    • Fix an issue where GPU processing would not get enabled when switching from a license that does not allow GPU processing to one that does.
  • (E/P) (Twin) Mip Renderer:
    • Fix an issue where the depth rendering would not work for images with more than 4 channels.
  • (E/P/L) Preferences
    • Fix an issue where thread restrictions were not applied correctly in some cases.
  • (All) File readers:
    • OME-XML reader:
      • Fix reading in files upside-down, i.e. with an inverted Y-axis.
      • Enable reading OME-XML files written in the the 2016_06 schema.
    • OME-TIFF reader:
      • Fix the -series auto option of img_open not recognizing a series for files with .ome.tif(f) extension.
    • Abberior OBF:
      • Fix regression where some older obf files with compression were not read.
  • (All) File Writers:
    • OME-XML writer:
      • Fixed issue where files were saved upside-down, i.e. with an inverted Y-axis.
  • (E/P) Bleaching Corrector:
    • Fix an issue where access was wrongly blocked when only multi-photon microscopes were licensed.
  • (L) Table Export window:
    • The 'The name of the table to create' entry now actually becomes the name of the opened table.


23.04.0p6

(14th of September 2023)
  • (All) File readers:
    • OME-TIFF: Fixed regression introduced in 22.10 causing for some files to read in only the first slice instead of the full z-stack, for example some ImSpector exported data.
    • CZI:
      • Fixed an issue where images with invalid wavelength values could not be opened.
      • Fixed an issue where backprojected pinhole values where not estimated correctly when only a few channels have metadata for them.
      • When the microscope type cannot be determined from the metadata, use "confocal" as default.
  • (E/P/L) Object Analyzer:
    • Fixed an error when hovering over an object after sorting the table.
  • (E/P/L) Hot & cold pixel remover in Workflow Processor:
    • Fixed a bug where for images with a particular dimension setup a valid mask image would be rejected as having the wrong dimensions.
  • (E/P) Interactive Fuser:
    • Fix regression introduced in 23.04.0p0 where image data could not be processed in the fusion steps.
      *Applies only to data where all rotational views are opened from a single container image file format like .CZI or .LIF files.
  • (E/P) Array Detector Quality Control Tool:
    • Change default value of intensity coloring to scale with respect to the detector with maximum intensity instead of central detector.

23.04.0p5

(24th of August 2023)
  • (E/P) Array Detector Quality Control Tool:
    • Add support for Airyscan 2 images;
    • No longer show the "Shift" tab for preprocessed detector models for which shift computations are not possible.
  • (L) Cluster Analyzer:
    • Fix the auto color option not working correctly when enabling this option with an out-dated clustering, i.e. changing cluster parameters without pressing Cluster & Render and then enabling the auto-color option in the Visualization tab.
  • (L) Localizer:
    • Improve the localization of rare particles where the initial guess has a negative intensity after background subtraction. This might add localizations to the final result as such these rare particles are no longer directly discarded. The values of the other localizations are unaffected.
  • (E/P) Object Stabilizer:
    • Use a more notable button for entering the wizard.
  • (E/P/L) User Interface:
    • Improve the contrast of the highlighted text for some entry boxes.

23.04.0p4

(25th of July 2023)

New features and minor changes
  • (E/P/L) Object Analyzer (Basic):
    • Add convex hull based analysis.
      • Added option to set the ROI to the convex hull of a selection of objects.
      • Added two new analysis presets: for analyzing the geometry of the convex hull of an object and for distance between objects based on their convex hulls.
      • On-the-fly visualization of the convex hull when hovering over a convex hull related parameter in the statistics table.
    • (E/P) Improve settings in the segmentation task of the Analysis Workflow Designer
      • Separate the entries for the threshold, seed, and sigma when doing automatic estimation, instead of one setting that controls all.
    • (E/P) Add option to load a different ROI for each input image in to the "Load ROI from file" option.
    • Extend file formats used to read and write ROI's from just hdf5 to hdf5, ics, ome-tiff and tiff.
  • (All) Hot & Cold Pixel Corrector:
    • Changed detected hot/cold pixel overlay to be drawn on the result on the right, for easier comparison with the original hot pixels on the original on the left.
    • Overlay visualization option is now a checkbox that either shows or hides the Hot/Cold Pixel Mask on top of the result image.
  • (All) File readers:
    • IMS: The Brightfield microscope type is now read from new Imaris files.
    • MSR: Parse objective information for imspector .msr files.
  • (All) Rename tool:
    • Improved scalability of rename window for larger image names.
  • (E/P) File series tool:
    • Allow users to open tiles from a file series in the Huygens main window instead of forcing them directly to the Stitcher.
  • (C) Command line interface:
    • Allow setting which GPU device to use for a template by using the -gpuDevice option on the command line.
  • (E/P) Colocalization Analyzer:
    • Extend file formats used to read and write ROI's from just hdf5 to hdf5, ics, ome-tiff and tiff.

Bugfixes
  • (E/P) QMLE Deconvolution:
    • Fix issue where early stop requests during QMLE deconvolution would not result in the end of the deconvolution run.
  • (All) File readers:
    • OBF: Fix for Facility Line and Infinity Line .obf files only showing separate channels due to new version number schema in OME-XML metadata.
    • TIFF: Fix a rare issue where only the first slice was loaded on Linux.
  • (E/P/L) Workflow Designer:
    • Fixed a bug when using the fileseries tool with the ignore or "numerical" setting.
    • Fixed a bug for stitching templates where the channels used for stitching would unintentionally reset.
    • Fixed a bug where loading a template with the "Load ROI from file" option would give an error.
    • Fixed a bug where loading a decon template with a single deconvolution task set all 32 channels to verified.
  • (E/P) Deconvolution Wizard:
    • Fixed a crash when processing a multi-photon image with negative values.
  • (E/P) Stitching Wizard:
    • Fixed a bug where templates were not accepted due to a non-existing mismatch in dimensions.
  • (E/P) Colocalization Analyzer:
    • Fixed an issue where the Colocalization Analyzer Compact & Advanced tools could not start with RBNCC options enabled.
  • (L) Cluster Analyzer:
    • Fix an issue where clustering the same channel with different settings in both pipes, could go wrong in a rare case.
      • When first clustering the channel in pipe A, then the clustering (the same) channel in pipe B and finally the visualization settings Render mode and/or FWHM of pipe A are changed, pipe A copied the clustering of pipe B in the rendering and analysis. Here clustering means pushing the Cluster & Render button.
  • (L) Localizer 2D/3D:
    • Fix a rare crash during the localization on Linux.

23.04.0p3

(3rd of July 2023)
  • (All) Deconvolution:
    • Fixed regression from 23.04.0p0 resulting in sub-optimal results for densly (over)sampled confocal images at larger iteration counts.
    • Improved Signal to Noise Ratio estimation for non-descanned detector Multi-photon images.
  • (E/P) Deconvolution Wizard/Express:
    • Added an extra check for NA and refractive indices to prevent potential crashes in the Deconvolution Wizard and Deconvolution Express.
  • (All) Workflow Processor:
    • Print image names instead of image handles in the progress report of the workflow processor.
  • (All) File reader:
    • All: Fixed regression from 23.04.0p0 resulting in "File does not exist" errors when trying to read files that contain consecutive spaces in the filename.
    • LIF: Improved reading of the emission wavelength for widefield .lif images.
    • MSR/OBF: Add imspector XML metadata parsing for Expert Line .msr files.
    • TIFF: Add better support for reading pixeldata from 16-bit signed tiffs with intensity offsets as written by ImageJ.
  • (C) Command line interface:
    • Fix issue where the default value for the -imgOpen CLI option caused a template to fail. (This affected HRM.)
  • (L) Object Analyzer Basic:
    • Fixed Cluster Analysis not finding any clusters.
    • Fixed some coloring parameters not working.
  • (All) GPU support
    • Fixed regression from 23.04.0p0 where Cuda Toolkit version 11.6 could not be used with Huygens 23.04.
  • (P/E) Chromatic Aberration Correction Wizard:
    • Fix for the error messages "Value for 'threshG' is below range: resetting to 0.000000" for integer-typed images with very low values.

23.04.0p2

(2nd of June 2023)
  • (C) Fix locale issues for HRM and HuCore users
    • Prevent problems that could arise from the potential use of the comma (,) as decimal separators instead of period (.).
  • (All) File reader:
    • MSR/OBF: Fix issue where images would only open up as separate channels. (Affected versions were 23.04.0p0 and 23.04.0p1)

23.04.0p1

(1st of June 2023)
  • (All) File reader:
    • Olympus VSI: Prevented crash when trying to open an invalid VSI file.
    • OME-TIFF: Fixed regression from 23.04.0p0 introducing a potential memory leak.
  • (E/P) Workflow Processor:
    • Ensured the correct names are used when saving series images.
    • Fixed getting a lot of warnings about Chromatic Shift Correction in some situations where it was not used.
    • Fixed error when trying to execute an analysis template that shifts the ROI.
  • (P) Operations Window:
    • Fixed issue where results of operations were not shown when using images a, b, c or psf as output.
  • (C) Command line interface:
    • Prevented problems when using the -series option in HuCore intended as argument for a script.

22.10.0p6

(12th of April 2023)
  • (E/P) Stitching & Deconvolution Wizard
    • Fix reading of angle for rotated OBF tile series in the stitcher.
  • (E/P) Deconvolution Wizard
    • Fix reduction mode setting for multichannel array detector images.
  • (P) FWHM estimator:
    • Fix a rare crash that could occur in the FWHM estimator.
  • (P) Image Convert tool
    • Fix an XY(ChZ) -> XYZCh conversion unintended changing the coverslip position.

22.10.0p5

(1st of March 2023)

  • (All) File reader:
    • LIF: Fix only reading in the first sub image for FLIM Tau STED data.
    • OBF/MSR: Fix memory leak that occurred for tiled datasets when parsing OME-XML metadata in OBF files.
    • OME-TIFF: Fix the offset of a multi-file series for files exported by VisiView.
    • OME-TIFF: Fix an issue where only a single z-slice was read in from a z-stack for files exported by ImSpector.
    • OME-TIFF: Fix for rare case where the ome-tiff reader could hang.
    • OME: Fix memory leak that occurred when reading in OME-TIFF or OME-XML files.
    • (C) VSI / ND2: improve reading metadata for spinning disk images.
  • (L) Cluster Analyzer:
    • Fix the threshold (slider) not correctly initializing to 0.5 for all channels except the first one.
    • Fix the average intensity parameter not being reported.
  • (E/P) Decon Wizard:
    • Fix an issue where the iteration count used for QMLE was not updated properly when editing the acuity or SNR.
  • (E/P/L) Object Analyzer:
    • Fix an issue causing distance to surface computions to take much longer than needed.
    • Fix an issue where formerly removed objects could not be highlighted anymore after reloading the data.

22.10.0p4

(7th of February 2023)
  • (All) File writer:
    • TIFF: fixed an issue where multi-directory tiffs/tiffs contain all z-slices in a single file could overwrite existing files without a warning.
    • TIFF: no longer remove the last number in the filename when saving a tiff series, if the number is not clearly a slice, time frame, channel or detector counter.
  • (E/P/L) Object Analyzer:
    • Fix an error when selecting all objects as anchors.
    • Fix an error when changing the threshold value in the MIP segmentation group.
  • (L) Cluster Analyzer:
    • Fix distance configured to be reported on-screen not being plotted for 2D data.
  • (All) Deconvolution:
    • GMLE: fixed a resource leak that could cause deconvolution to fail with an error: "Variable overflow detected during execution"
  • MacOS Ventura:
    • (E/P/L) The release of macOS Ventura introduced a regression that caused applications handled by XQuartz (like Huygens) to get unexpectedly minimized in some cases. This patch adds some workarounds to mitigate this, but some issues might persist.

22.10.0p3

(4th of January 2023)
  • (All) File writer:
    • OME-TIFF: fix regression, since 22.10.0p1, writing the companion.ome file at the wrong location.
    • OME-TIFF: fix issue with writing (and reading) multi-detector images containing multiple slices/frames or/and channels.
  • (All) File reader:
    • ND2: fixed an issue where for some SoRa images the pinhole diameter was not read correctly.
  • MacOS:
    • (E/P/L) Extend the fix for font related crashes that was first deployed in 22.10.0p2. In particular, these type of crashes should now also be fixed on macOS Ventura.

22.10.0p2

(13th of December 2022)
  • (All) License manager:
    • Fix regression where errors would not be displayed when adding a wrong license to the license manager.
  • (All) GPU Processing:
    • Improve description of steps to take when CUDA Toolkit is not found.
  • (E/P/L) User Interface:
  • (E/P/L) Object Analyzer:
    • Fix an issue where pressing "Reload original data" would not reinstate objects in all time frames and/or detectors.
  • (E/P) Mip Renderer:
    • Fix an issue where the Mip Renderer could crash when rendering a very large image in High Quality mode.
  • MacOS:
    • (E/P/L) Fix an issue where Huygens could crash when a specific font library would fail.

22.10.0p1

(30th of November 2022)
  • (All) File reader:
    • CZI: fix crash on Windows when reading JPEG-XR compressed data.
    • OME-XML: fix a regression breaking the OME-XML reader since the 22.10 release.
  • (All) File writer:
    • OME-TIFF: fix OME-TIFF writer not correctly handling file paths longer than 128 characters.
    • OME-XML: fix a regression breaking the OME-XML writer since the 22.10 release.
  • (All) GPU Processing:
    • Fix Huygens crashing when loading the CUDA library fails in an early stage.
  • (E/P) Decon Express:
    • Fix an issue where the result image could have incorrect scaling when operating under low memory conditions.
  • (E/P/L) Object Analyzer:
    • Fix an issue where some operations (such as deselecting all anchors) were not applied to all time frames and/or detectors.
  • (E/P/L) User interface:
    • Improvements for the user interface scaling that can be set in the preferences.
  • (E/P) Ortho Slicer:
    • Fix a regression where xz- and yz-slicers were initialized at the wrong position.



Huygens Remote Manager 3.8


We are happy to announce the immediate availability of HRM 3.8.0!

This release adds several new functionalities and makes a few changes that require a slight update in the minimum required versions of PHP and HuCore for the first time in several years:

New minimum required versions for HRM 3.8 are now PHP 7.2 and HuCore 21.10.1

Also, please notice that there was a simplification in the configuration files. See the upgrade instructions for more details (estimated time for upgrading ~20 minutes).
Changelog

New features and changes in HRM 3.8.0 are:

  • Added Hot Pixel Remover as optional pre-processing step
  • Added new Acuity restoration parameter
  • Added support for Olympus VSI files
  • Added option to disable bleaching correction
  • Added Python pip package for installing the HRM-OMERO connector very easily
  • Enhanced usability in OMERO Connector
  • Updated list of instruments in back-projected pinhole calculator
  • Merged server and client configuration files into one
  • Extended and updated documentation
  • Several fixes and usability enhancements

Hope you will enjoy the new HRM 3.8.0 release!

You can download HRM 3.8.0 from the official download page: http://huygens-rm.org/wp/?page_id=11.

You can also test our *experimental* new HRM installer!
(source http://www.huygens-rm.org)





For older release information see: WhatsNewArchive.